publications
Below is a list of my selected publications. For a complete list, please visit my Google Scholar or ResearchGate profile.
Conference Papers
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Ensembits: an alphabet of protein conformational ensembles
Kaiwen Shi, Carlos Oliver
Advances in Neural Information Processing Systems (NeurIPS), 2026
Paper Link -
BioBlobs: Unsupervised Discovery of Functional Substructures for Protein Function Prediction
Xin (Allen) Wang, Kaiwen Shi, Carlos Oliver
Advances in Neural Information Processing Systems (NeurIPS), 2026
Paper Link -
Linear Spherical Sliced Optimal Transport: A Fast Metric for Comparing Spherical Data
Xinran Liu, Yikun Bai, Rocio Diaz Martin, Kaiwen Shi, Ashkan Shahbazi, Bennett Allan Landman, Catie Chang, Soheil Kolouri
International Conference on Learning Representations (ICLR), 2025
Paper Link
Other Contributions
- Time Parameterized Optimal Transport
Kaiwen Shi
Undergraduate Honors Thesis, Vanderbilt University, Dec 2024
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